Dunin-Horkawicz, Stanislaw: search on Z-Library

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1

RRMdb—an evolutionary-oriented database of RNA recognition motif sequences

Nowacka, Martyna, Boccaletto, Pietro, Jankowska, Elzbieta, Jarzynka, Tomasz, Bujnicki, Janusz M, Dunin-Horkawicz, Stanislaw

Journal:

Year:

2019

Language:

english

File:

PDF, 1.91 MB

english, 2019

2

Mechanism of Regulation of Receptor Histidine Kinases

Hedda U. Ferris, Stanislaw Dunin-Horkawicz, Nora Hornig, Michael Hulko, Jörg Martin, Joachim E. Schultz, Kornelius Zeth, Andrei N. Lupas, Murray Coles

Journal:

Year:

2012

Language:

english

File:

PDF, 1.64 MB

english, 2012

3

Computational modeling of RNA 3D structures, with the aid of experimental restraints

Magnus, Marcin, Matelska, Dorota, Łach, Grzegorz, Chojnowski, Grzegorz, Boniecki, Michal J, Purta, Elzbieta, Dawson, Wayne, Dunin-Horkawicz, Stanislaw, Bujnicki, Janusz M

Journal:

Year:

2014

Language:

english

File:

PDF, 1.59 MB

english, 2014

4

STAC—A New Domain Associated with Transmembrane Solute Transport and Two-Component Signal Transduction Systems

Korycinski, Mateusz, Albrecht, Reinhard, Ursinus, Astrid, Hartmann, Marcus D., Coles, Murray, Martin, Jörg, Dunin-Horkawicz, Stanislaw, Lupas, Andrei N.

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 2.05 MB

english, 2015

5

Functional and evolutionary analyses of Helicobacter pylori HP0231 (DsbK) protein with strong oxidative and chaperone activity characterized by a highly diverged dimerization domain

Bocian-Ostrzycka, Katarzyna M., Łasica, Anna M., Dunin-Horkawicz, Stanisław, Grzeszczuk, Magdalena J., Drabik, Karolina, Dobosz, Aneta M., Godlewska, Renata, Nowak, Elżbieta, Collet, Jean-Francois, Ja

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 3.19 MB

english, 2015

6

The GD box: A widespread noncontiguous supersecondary structural element

Vikram Alva, Stanislaw Dunin-Horkawicz, Michael Habeck, Murray Coles, Andrei N. Lupas

Journal:

Protein Science

Year:

2009

Language:

english

File:

PDF, 426 KB

english, 2009

7

Measuring the conformational space of square four-helical bundles with the program samCC

Stanislaw Dunin-Horkawicz, Andrei N. Lupas

Journal:

Journal of Structural Biology

Year:

2010

Language:

english

File:

PDF, 1010 KB

english, 2010

8

Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor

Ferris, Hedda U., Zeth, Kornelius, Hulko, Michael, Dunin-Horkawicz, Stanislaw, Lupas, Andrei N.

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

9

Comprehensive Analysis of HAMP Domains: Implications for Transmembrane Signal Transduction

Stanislaw Dunin-Horkawicz, Andrei N. Lupas

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 7.79 MB

english, 2010

10

Prokaryotic Ancestry of Eukaryotic Protein Networks Mediating Innate Immunity and Apoptosis

Dunin-Horkawicz, Stanislaw, Kopec, Klaus O., Lupas, Andrei N.

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 2.51 MB

english, 2014

11

Rational Design of Helical Nanotubes from Self-Assembly of Coiled-Coil Lock Washers

Xu, Chunfu, Liu, Rui, Mehta, Anil K., Guerrero-Ferreira, Ricardo C., Wright, Elizabeth R., Dunin-Horkawicz, Stanislaw, Morris, Kyle, Serpell, Louise C., Zuo, Xiaobing, Wall, Joseph S., Conticello, Vin

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.77 MB

english, 2013

12

Designability landscape reveals sequence features that define axial helix rotation in four-helical homo-oligomeric antiparallel coiled-coil structures

Szczepaniak, Krzysztof, Lach, Grzegorz, Bujnicki, Janusz M., Dunin-Horkawicz, Stanislaw

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 2.94 MB

english, 2014

13

Impact of selected amino acids of HP0377 (Helicobacter pylori thiol oxidoreductase) on its functioning as a CcmG (cytochrome c maturation) protein and Dsb (disulfide bond) isomerase

Grzeszczuk, Magdalena Joanna, Bąk, Aleksandra, Banaś, Anna Marta, Urbanowicz, Paweł, Dunin-Horkawicz, Stanislaw, Gieldon, Artur, Czaplewski, Cezary, Liwo, Adam, Jagusztyn-Krynicka, Elżbieta K., Franco

Journal:

Year:

2018

Language:

english

File:

PDF, 20.70 MB

english, 2018

14

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

Karolina L Tkaczuk, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 5.14 MB

english, 2007

15

Phylogenomic analysis of the GIY-YIG nuclease superfamily

Stanislaw Dunin-Horkawicz, Marcin Feder, Janusz M Bujnicki

Journal:

Year:

2006

Language:

english

File:

PDF, 3.56 MB

english, 2006

16

A soluble mutant of the transmembrane receptor Af1503 features strong changes in coiled-coil periodicity

Hartmann, Marcus D., Dunin-Horkawicz, Stanislaw, Hulko, Michael, Martin, Jörg, Coles, Murray, Lupas, Andrei N.

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 2.87 MB

english, 2014

17

TheyfhQgene ofEscherichia coliencodes a tRNA:Cm32/Um32 methyltransferase

Elzbieta Purta, Françoise van Vliet, Karolina L Tkaczuk, Stanislaw Dunin-Horkawicz, Hirotada Mori, Louis Droogmans, Janusz M Bujnicki

Journal:

BMC Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.98 MB

english, 2006

18

Computational modeling of protein–RNA complex structures

Tuszynska, Irina, Matelska, Dorota, Magnus, Marcin, Chojnowski, Grzegorz, Kasprzak, Joanna M., Kozlowski, Lukasz P., Dunin-Horkawicz, Stanislaw, Bujnicki, Janusz M.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

19

Variability of the core geometry in parallel coiled-coil bundles

Szczepaniak, Krzysztof, Ludwiczak, Jan, Winski, Aleksander, Dunin-Horkawicz, Stanislaw

Journal:

Journal of Structural Biology

Year:

2018

Language:

english

File:

PDF, 2.06 MB

english, 2018

20

Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pylori

Yahara, Koji, Furuta, Yoshikazu, Morimoto, Shinpei, Kikutake, Chie, Komukai, Sho, Matelska, Dorota, Dunin-Horkawicz, Stanisław, Bujnicki, Janusz M., Uchiyama, Ikuo, Kobayashi, Ichizo

Journal:

Year:

2016

Language:

english

File:

PDF, 544 KB

english, 2016

21

RRMdb—an evolutionary-oriented database of RNA recognition motif sequences

Nowacka, Martyna, Boccaletto, Pietro, Jankowska, Elzbieta, Jarzynka, Tomasz, Bujnicki, Janusz M, Dunin-Horkawicz, Stanislaw

Journal:

Year:

2019

File:

PDF, 1.91 MB

2019

22

A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins

Birte Hernandez Alvarez, Markus Gruber, Astrid Ursinus, Stanislaw Dunin-Horkawicz, Andrei N. Lupas, Kornelius Zeth

Journal:

Journal of Structural Biology

Year:

2010

Language:

english

File:

PDF, 1.79 MB

english, 2010

23

The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein

Blatter, Markus, Dunin-Horkawicz, Stanislaw, Grishina, Inna, Maris, Christophe, Thore, Stephane, Maier, Timm, Bindereif, Albrecht, Bujnicki, Janusz M., Allain, Frédéric H.-T.

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 2.90 MB

english, 2015

24

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes

Machnicka, Magdalena A., Kaminska, Katarzyna H., Dunin-Horkawicz, Stanislaw, Bujnicki, Janusz M.

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 6.46 MB

english, 2015

25

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information

Boccaletto, Pietro, Magnus, Marcin, Almeida, Catarina, Żyła, Adriana, Astha, Astha, Pluta, Radosław, Bagiński, Błażej, Jankowska, Elżbieta, Dunin-Horkawicz, Stanisław, Wirecki, Tomasz K., Boniecki, Mi

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 816 KB

english, 2017

26

tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs

Machnicka, Magdalena A., Dunin-Horkawicz, Stanislaw, de Crécy-Lagard, Valérie, Bujnicki, Janusz M.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.18 MB

english, 2016

27

Two unique membrane-bound AAA proteins from Sulfolobus solfataricus

Serek-Heuberger, Justyna, Hobel, Cédric F.V., Dunin-Horkawicz, Stanislaw, Rockel, Beate, Martin, Jörg, Lupas, Andrei N.

Journal:

Biochemical Society Transactions

Year:

2009

Language:

english

File:

PDF, 788 KB

english, 2009

28

DeepCoil – a fast and accurate prediction of coiled-coil domains in protein sequences

Ludwiczak, Jan, Winski, Aleksander, Szczepaniak, Krzysztof, Alva, Vikram, Dunin-Horkawicz, Stanislaw, Hancock, John

Journal:

Year:

2019

Language:

english

File:

PDF, 389 KB

english, 2019

29

Loss of conserved non-coding RNAs in genomes of bacterial endosymbionts

Matelska, Dorota, Kurkowska, Malgorzata, Purta, Elzbieta, Bujnicki, Janusz M., Dunin-Horkawicz, Stanislaw

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 3.15 MB

english, 2016

30

Combining Rosetta with molecular dynamics (MD): a benchmark of the MD-based ensemble protein design

Ludwiczak, Jan, Jarmula, Adam, Dunin-Horkawicz, Stanislaw

Journal:

Journal of Structural Biology

Year:

2018

Language:

english

File:

PDF, 1.32 MB

english, 2018

31

The Mechanisms of HAMP-Mediated Signaling in Transmembrane Receptors

Hedda U. Ferris, Stanislaw Dunin-Horkawicz, Laura García Mondéjar, Michael Hulko, Klaus Hantke, Jörg Martin, Joachim E. Schultz, Kornelius Zeth, Andrei N. Lupas, Murray Coles

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

32

Self-Inflicted Eye Injuries*

Segal, Pawel, Mrzyglod, Stanislaw, Alichniewicz-Czaplicka, Halina, Dunin-Horkawicz, Wiktor, Zwyrzykowski, Eugeniusz

Journal:

American Journal of Ophthalmology

Year:

1963

Language:

english

File:

PDF, 6.37 MB

english, 1963

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